Analysis by Category SAM Chip 1.0 (GPL2557): SAM vs Whole Seedling

Spots Annotated

Up Regulated

Down Regulated

1819 892927

Up-Regulated Genes

Pie-chart of the Categories
  Category Count Percentage
A Cell Division 63 7.1%
B Chromatin 106 11.9%
C Cytoskeletal 20 2.2%
D Development 29 3.3%
E DNA Repair 16 1.8%
F Extracellular Matrix/Cell Wall 17 1.9%
G Transport 26 2.9%
H Metabolism 64 7.2%
I MySEG 68 7.6%
J Other 28 3.1%
K Protein Fate 64 7.2%
L Transposable Elements 33 3.7%
M RNA Binding Protein 40 4.5%
N RNA Processing 25 2.8%
O Signal Transduction 51 5.7%
P Gene Silencing 11 1.2%
Q Transcription 78 8.7%
R Translation 56 6.3%
S Unknown 174 19.5%
T Vesicle Trafficking 8 0.9%
U Defense 7 0.8%
V Photosynthesis-related 1 0.1%
W Respiration 0 0.0%
X ATPase 6 0.7%
Y Stress-related 15 1.7%
Z No hits 1 0.1%
 Total 1007 112.9%

Down-Regulated Genes

Pie-chart of the Categories
  Category Count Percentage
A Cell Division 6 0.6%
B Chromatin 3 0.3%
C Cytoskeletal 13 1.4%
D Development 32 3.5%
E DNA Repair 0 0.0%
F Extracellular Matrix/Cell Wall 34 3.7%
G Transport 98 10.6%
H Metabolism 259 27.9%
I MySEG 0 0.0%
J Other 33 3.6%
K Protein Fate 38 4.1%
L Transposable Elements 1 0.1%
M RNA Binding Protein 8 0.9%
N RNA Processing 4 0.4%
O Signal Transduction 50 5.4%
P Gene Silencing 3 0.3%
Q Transcription 35 3.8%
R Translation 30 3.2%
S Unknown 142 15.3%
T Vesicle Trafficking 17 1.8%
U Defense 52 5.6%
V Photosynthesis-related 38 4.1%
W Respiration 3 0.3%
X ATPase 31 3.3%
Y Stress-related 114 12.3%
Z No hits 45 4.9%
 Total 1089 117.4%

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