Very high similarity with DV490091.
which is upregulated at a bigger p-value than the cutoff
Replacement for AW120065 in SAM 1 resequencing.
No significant hits with blastx of genbank. No significant hits with blastn of assembled ESTs at MAGI database.
Ran seqquence through MAGI's repeatmasker and got the following results
Repeats
>DV490147 1000038-G01.T7-1 UGI-Reseq Zea mays cDNA, mRNA sequence. (93 bp masked -- 13.94% masked)
GGGCGAGACAAGCTACCTTTCCTATCCGATCAGAAATCCTATCGATATCCTCGGCAAAGCAAATAGTCCAGCATGGGCAT
TACATTAAGTAGAAGTAGAATTTGCTAGTTGTATACGAACCTTCGCCAATTAAAGCGAGCTATTCCTACAATGGTGCTGC
TCAATCCTTTACGGCTGTAGTTCTGAATCTAGTGATCGGCTATGGTTGAAGCTTTAGTGCCTTGTAGATGTCAAATAGAG
ATCAAGCAAACATGCTTCCGCGGGGATCAGATTTACCAGATCTGGTATTAGTCTAACTTACTGAGGTAGTCGATTGGAGA
AGAGGGCCACATCACACTCTAGACAGATCCGAAGCGAAAGACCAGTATCAATCTCTTCCCCCGAGCCAGCCCTGCGGGTA
TCCTTTTCTCCGCCGCTCTTCAGATAAGATAGGCTACACTCGAAAAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACAGGCAGGCGCT
TAGGCCAGTCCAAAAGCAGAAAGAGAGAAGTTGGGGTCTTCGTCTACTGATCTTGTGGTTGATAGCCATCGAGGTAGTTC
TGCGAATCTTTCTATGGAGGTTGGCTA
The sequence does not hit with a MAGI (4.0)
MAGI sequenced BAC's blast resutls: no hits
MicroRNA database: no hits
NCBI blastn of maize (htgs): no significant hits
Electronic Northern (Blastn results of maize EST's on NCBI): expressed in root and SAM
*no evidence of alternative spicing
