Displaying DV622110 on SAM Chip 1.0 (GPL2557): SAM vs Whole Seedling

Accession 1: DV622110 (GenBank)  Gene: 0
Accession 2:   Library Index: UniGeneIVT2_RS-G-18
Gene Names:
  • MySEG 125
Categories:   
 ATPase
 Cell Division
 Cell Cycle
 DNA Replication
 Chromatin
 Chromatin Remodeling
 Chromatin Structure
 Cytoskeletal
 DNA Repair
 Defense
 Development
 Extracellular Matrix/Cell Wall
 Gene Silencing
 Metabolism
 Lipid
 Nucleotide
 Amino Acid
 Sugar
 Energy
 MySEG
 No hits
 Other
 Photosynthesis-related
 Protein Fate
 Proteolysis
 Chaperone
 RNA Binding Protein
 RNA Processing
 Respiration
 Signal Transduction
 Phosphatase
 G-proteins and Associated Proteins
 Signal Molecules
 Kinases
 Receptors
 Stress-related
 Transcription
 Transcription-Associated Proteins
 Transcription Factors
 Translation
 Ribosome
 Translation-Associated Proteins
 Transport
 Transposable Elements
 DNA Transposons
 Retrotransposon
 Unknown
 Vesicle Trafficking
GO Categories:
Molecular Function
molecular_function unknown
signal transducer activity
transporter activity
antioxidant activity
catalytic activity
triplet codon-amino acid adaptor activity
enzyme regulator activity
transcription regulator activity
binding
motor activity
structural molecule activity
nutrient reservoir activity
chaperone regulator activity
Biological Process
behavior
physiological process
cellular process
biological_process unknown
regulation of biological process
development
viral life cycle
Cell Component
cellular_component unknown
extracellular region
virion
cell
organelle
extracellular matrix
protein complex
Light Intensity Reads P-Value Fold Change
Low 3.43e-06 888.841
Medium 0.001186755 115.403
High 5.97e-05 62.608
BLAST results for DV622110   
BLASTN E-value: 0.0 Longest MEC sequence 
BLASTX E-value: None    
MAGI blast Fresh results
Show/Hide Reading Frames/PsortPrediction
Researcher: Lisa Grantham (djb checked), (eneda h rechecked)/ Kate Brown   Last Updated: 2006-07-14
Notes:

Replaces accession BQ294109

no significant blastx hits, no informative blastn hits
InterPro (nucleotide sequence entered): no hits

Repeat masker of the sequence showed no masked bp.

The sequence does not hit with a MAGI (4.0) sequence

MAGI sequenced BAC's blast results: The hits suggest that a paralog exists on a different BAC (the BAC's were pairwise blasted to indicate that they were in fact different). They resembled near identical paralogs.

>gb|AC186405.1| Zea mays chromosome UNK clone ZMMBBb-573N17; ZMMBBb0573N17, ***
SEQUENCING IN PROGRESS ***, 18 unordered pieces
Length = 125337

Score = 1370 bits (691), Expect = 0.0
Identities = 700/703 (99%)
Strand = Plus / Minus
>gb|AC177912.1| Zea mays chromosome UNK clone CH201-142P5; ZMMBBc0142P05, ***
SEQUENCING IN PROGRESS ***, 10 unordered pieces
Length = 125066

Score = 1176 bits (593), Expect = 0.0
Identities = 635/649 (97%)
Strand = Plus / Plus
MicroRNA database: no hits
NCBI maize genome blast: no hits
NCBI blastn of maize EST: expressed in Immature Ear and apex
*there is no evidence of alternative splicing
NCBI blastn of maize (htgs): confirmed the MAGI BAC results