Displaying DV491725 on SAM Chip 1.0 (GPL2557): SAM vs Whole Seedling

Accession 1: DV491725 (GenBank)  Gene: 0
Accession 2:   Library Index: IUG23_RS-I-23
Gene Names:
  • Aspartate kinase-like
  • EC:2.7.2.4
Categories:   
 ATPase
 Cell Division
 Cell Cycle
 DNA Replication
 Chromatin
 Chromatin Remodeling
 Chromatin Structure
 Cytoskeletal
 DNA Repair
 Defense
 Development
 Extracellular Matrix/Cell Wall
 Gene Silencing
 Metabolism
 Lipid
 Nucleotide
 Amino Acid
 Sugar
 Energy
 MySEG
 No hits
 Other
 Photosynthesis-related
 Protein Fate
 Proteolysis
 Chaperone
 RNA Binding Protein
 RNA Processing
 Respiration
 Signal Transduction
 Phosphatase
 G-proteins and Associated Proteins
 Signal Molecules
 Kinases
 Receptors
 Stress-related
 Transcription
 Transcription-Associated Proteins
 Transcription Factors
 Translation
 Ribosome
 Translation-Associated Proteins
 Transport
 Transposable Elements
 DNA Transposons
 Retrotransposon
 Unknown
 Vesicle Trafficking
GO Categories:
Molecular Function
molecular_function unknown
signal transducer activity
transporter activity
antioxidant activity
catalytic activity
triplet codon-amino acid adaptor activity
enzyme regulator activity
transcription regulator activity
binding
motor activity
structural molecule activity
nutrient reservoir activity
chaperone regulator activity
Biological Process
behavior
physiological process
cellular process
GO Numbers
0008652
biological_process unknown
regulation of biological process
development
viral life cycle
Cell Component
cellular_component unknown
extracellular region
virion
cell
organelle
extracellular matrix
protein complex
Light Intensity Reads P-Value Fold Change
Low 7.09e-06 913.547
Medium 0.002027006 73.3595
High 1.36e-07 36.2567
BLAST results for DV491725   
BLASTN E-value: 2e-112 Longest MEC sequence 
BLASTX E-value: None    
MAGI blast Fresh results
Show/Hide Reading Frames/PsortPrediction
Researcher: Lisa Grantham (djb checked)(C. Manton checked)   Last Updated: 2007-05-14
Notes:

Replaces accession AI999838

651 bps
UniGene: T48575 aspartate kinase - Arabidopsis thaliana 75 % / 37 aa
BlastN: putative aspartate kinase - doesn't match up exactly with the coding regions for the putative aspartate kinase, overlap of a few base pairs on either end
BlastX: very short hits with aspartate kinase in rice

MAGI blast identified a predicted gene at the location of the blastn alignment of this accession: >FGENESHMAGI_64911.1 class=mRNA position=MAGI_64911:236..2515 (+ strand)
Ran FGENESHMAGI_64911.1 sequence through InterProScan

SEQUENCE: FGENESHMAGI_64911.1_1_ORF2 CRC64: F632C43CA8704816 LENGTH: 55 aa
InterPro
IPR001048
Domain
Aspartate/glutamate/uridylate kinase
SSF53633 [7-44]T 0.0036 SSF53633 Carbamate kinase-like Carbamate kinase-like
noIPR
unintegrated
unintegrated
PTHR21499 [10-48]T 1.8e-07 PTHR21499 ASPARTATE KINASE ASPARTATE KINASE
SEQUENCE: FGENESHMAGI_64911.1_2_ORF3 CRC64: E001044D9FFF9AA4 LENGTH: 91 aa
InterPro
IPR001048
Domain
Aspartate/glutamate/uridylate kinase
PF00696 [23-66]T 5.3e-09 PF00696 AA_kinase AA_kinase
SSF53633 [24-66]T 4.5e-07 SSF53633 Carbamate kinase-like Carbamate kinase-like
noIPR
unintegrated
unintegrated
PTHR21499 [24-66]T 5.2e-16 PTHR21499 ASPARTATE KINASE ASPARTATE KINASE
PTHR21499:SF1 [24-66]T 5.2e-16 PTHR21499:SF1 ASPARTATE KINASE ASPARTATE KINASE
signalp [1-24]? NA signalp signal-peptide signal-peptide

IPR001048 Aspartate/glutamate/uridylate kinaseIPR001048 Aspartate/glutamate/uridylate kinase

 

Abstract

This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli , thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively [ 1 ]. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits [ 2 ].

In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied [ 3 ]. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.