| Accession 1: CD573035
(GenBank)
| | Gene: 0 |
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Accession 2: CD573036
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Library Index: HakeT16_V2-H-13 |
Gene Names:
- Protein of unknown function DUF724-like
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Categories:
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GO Categories:
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Molecular Function
molecular_function unknown
GO Numbers
signal transducer activity
GO Numbers
transporter activity
GO Numbers
antioxidant activity
GO Numbers
catalytic activity
GO Numbers
triplet codon-amino acid adaptor activity
GO Numbers
enzyme regulator activity
GO Numbers
transcription regulator activity
GO Numbers
binding
GO Numbers
motor activity
GO Numbers
structural molecule activity
GO Numbers
nutrient reservoir activity
GO Numbers
chaperone regulator activity
GO Numbers
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Biological Process
behavior
GO Numbers
physiological process
GO Numbers
cellular process
GO Numbers
biological_process unknown
GO Numbers
regulation of biological process
GO Numbers
development
GO Numbers
viral life cycle
GO Numbers
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Cell Component
cellular_component unknown
GO Numbers
extracellular region
GO Numbers
virion
GO Numbers
cell
GO Numbers
organelle
GO Numbers
extracellular matrix
GO Numbers
protein complex
GO Numbers
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| Light Intensity Reads |
P-Value |
Fold Change |
| Low |
0.000153226 |
389.892 |
| Medium |
2.47e-05 |
24.7205 |
| High |
6.97e-06 |
20.1041 |
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UniGenes
| UniGene ID: | Zm.26294 |
| Title: | Transcribed locus |
| Expressed in | other ; stem ; Vegetative Shoot Apical Meristem (SAM) and leaf primordia staged P1-P4 ; inflorescence |
| Homologene: | YES |
All genes on chip in UniGene Zm.26294
AI901412, BQ528198, CD573035
View all in main table
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Show/Hide Reading Frames/PsortPrediction
------ Reading Frame 1------------ 9 stop codons---------- PSORT Prediction this frame--------
| DTERLHKSNHSTSI*AHCDT*IKLQPYSINRXQS*KQRNDTQSLCITWRPSAAAEPRLL* |
| TCVPRRCTNPRTRCMLS*YSRPLHLFSPSPVPSSGFPGGCARVLARAELRLHLFHRAXHR |
| LGRRKPXSPLALNSACRSLHGYGRAQI*SRSVRSRRSV*IAH*IHLPPEGRLS*PCPRTI |
| PCCRL |
------ Reading Frame 2------------ 4 stop codons---------- PSORT Prediction this frame--------
| IPNGCTKVTTAHRSEPTAIHR*NYSPTA*TXVRVRSSETIPKACASPGALPPQLSQDFFE |
| LAFRVAAQILVPAACCLDTHALCIYFLLLLCHLLAFLADAPEFLLELSCGSIFFIEQXTD |
| SGGGSXVLR*L*TQLADLSMDTGALRFDLDQFGQDALYRLHTESICLQKGDCPDLVLEPF |
| HAVVY |
------ Reading Frame 3------------ 3 stop codons---------- PSORT Prediction this frame--------
| YRTAAQK*PQHIDLSPLRYIDKTTALQHKQXSELEAAKRYPKLVHHLAPFRRS*AKTSLN |
| LRSASLHKSSYPLHAVLILTPSASIFSFSCAIFWLSWRMRPSSCSS*AAAPSFSSSXAPT |
| REEEAXFSASFELSLPISPWIRARSDLISISSVKTLCIDCTLNPFASRRETVLTLSSNHS |
| MLSS |
------ Reading Frame 4------------ 1 stop codons---------- PSORT Prediction this frame--------
| IDDSMEWFEDKVRTVSLLEANGFSVQSIQSVLTELIEIKSERARIHGEIGKLSSKLAENX |
| ASSSRVGXLLDEKDGAAAQLEQELGRIRQESQKMAQEKEKIDAEGVSIKTACSGYEDLCS |
| DAERKFKEVLAQLRRKGAR*CTSFGYRFAASNSDXCLCCRAVVLSMYRSGLRSMCCGYFC |
| AAVRY |
------ Reading Frame 5------------ 8 stop codons---------- PSORT Prediction this frame--------
| *TTAWNGSRTRSGQSPFWRQMDSVCNLYRAS*PN*SRSNLSAPVSMERSAS*VQS*RRXR |
| LPPPESVXCSMKKMEPQLSSSKNSGASARKARRWHRRRRK*MQRA*VSRQHAAGTRICAA |
| TRNASSKKSWLSCGGRAPGDAQALGIVSLLLTLXPVYAVGL*FYLCIAVGSDRCAVVTFV |
| QPFGI |
------ Reading Frame 6------------ 5 stop codons---------- PSORT Prediction this frame--------
| RRQHGMVRGQGQDSLPSGGKWIQCAIYTERLDRTDRDQI*ARPYPWRDRQAEFKASGEXG |
| FLLPSRCXAR*KRWSRSSARARTRAHPPGKPEDGTGEGENRCRGREYQDSMQRVRGFVQR |
| RGTQVQRSLGSAAAEGRQVMHKLWVSFRCF*L*XLFML*GCSFIYVSQWAQIDVLWLLLC |
| SRSV |
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Researcher: DJ-B (DJB CHECKED) |
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Last Updated: 2006-03-11
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Notes:no significant hits BlastX, no hits with Blastn!
Both accessions' sequences hit with the following longer MAGI: >MEC_6855_p95-May05 P95clusters.fas 1100 bp
This MEC was run through interproscan to look for conserved protein domains
IPR007930 Protein of unknown function DUF724
Abstract 
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This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana .
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IPR009053 Prefoldin
Abstract
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The Prefoldin/GimC family of proteins are found in eukaryotes and archaea [ 1 ]. Prefoldin is part of a molecular chaperone system that promotes the correct folding of nascent polypeptide chains. Prefoldin/GimC interacts with the nascent chain to stabilise it prior to its folding within the central cavity of a chaperonin. Prefoldin/GimC is a hexamer consisting of two types of subunits, alpha and beta. Archaeal prefoldin contains one type of alpha and one type of beta subunit [ 2 ], while eukaryotic prefoldin/GimC contains two different but related alpha subunits and four related beta subunits [ 3 ].
The SSF signature in this entry is currently under review. Please be aware that some of the protein hits may be false positives.
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