Replaces accession AI795359
no significant BlastX hits
InterPro (nucleotide sequence entered): no hits reported
UniGene: -Clone Contig209 mRNA sequence -hypothetical protein [Arabidopsis thaliana] 27.56 % / 127 aa
Could not identify a longer sequence on MAGI database
Ran sequence through repeatmasker and got the following results: Repeats
>AI795359 605011G03.y1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence. (626 bp masked -- 100.00% masked)
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Performed a Blastn of repeat database at ISU and got the following results:
Score E
Sequences producing significant alignments: (bits) Value
zm_SDRv3.1_13522 888 0.0
zm_SDRv3.1_13447 331 7e-91
zm_SDRv3.1_13462 276 4e-74
zm_SDRv3.1_13516 272 6e-73
zm_SDRv3.1_13536 111 1e-24
zm_SDRv3.1_13327 70 4e-12
zm_SDRv3.1_13405 56 7e-08
gnl|TREP|TREP1573 Unclassified, "Xalas_AY661558_3"; complete ele... 32 0.96
gnl|TREP|TREP1215 retrotransposon, LTR, gypsy, "Sukkula_TREP1215... 32 0.96
ZRSiTERTOOT0257 opie_238E11-1 ||retrotransposon 32 0.96
ZRSiTERTOOT0228 ji_573L14-2hdnm ji_573L14-2hdnm ZM573L14.fasta.s... 32 0.96
SZ-111#LTR/gypsy 13057bp LTR 751bp two gaps Similar to sz-52 ASS... 32 0.96
SZ-46TEMP#LTR/double? 18kb ASSEMBLE May 23, 2001 01:57 32 0.96
TOP HIT FROM REPEAT BLAST:
>zm_SDRv3.1_13522
Length = 492
Score = 860 bits (434), Expect = 0.0
Identities = 474/486 (97%), Gaps = 1/486 (0%)
Strand = Plus / Plus
Query: 1 cgaggagggg-acgatgcggcttcatacccttagaggtatgaaggcagaggacatatgca 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cgaggaggggtacgatgcggcttcatacccttagaggtatgaaggcagaggacatatgca 66
Query: 60 ttgcattcatatgcattcattgaagtgatatttgcagatgatgtggttttatactctcag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttgcattcatatgcattcattgaagtgatatttgcagatgatgtggttttatactctcag 126
Query: 120 agatatgaagatagagtacctacacattgcattcctatgcatacattgaagtgatatttg 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aggtatgaagatagagtacctacacattgcattcctatgcatacattgaagtgatatttg 186
Query: 180 caggtattgttgacgcggggaggtgttatagaacctattgtggttgttcgaggaaatgag 239
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 187 caggtattgttgacgcagggaagtgttatagaacctattgtggttgttcgaggaaatgag 246
Query: 240 atgatattggttatattgggactactaagttctatatctacaagtatttctgatcttgat 299
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 247 atggtattggttatattgggactactgagttctatatctacaagtatttctgatcttaat 306
Query: 300 tgtgattcttttaaaatgttgattaattcaatttgtggtttaaatatctcatcagaacaa 359
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct: 307 tgtgactcttttaaaatgttgatgaattcaatttgtggtttaaatatctcgtcaaaacaa 366
Query: 360 ttagcttgctgagatgtttcatctcactcttgcattactcaatgcaggtgcttgttgctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttagcttgctgagatgtttcatctcactcttgcattactcaatgcaggtgcttgttgctc 426
Query: 420 atcaaggggagtgggatgtagcagcacatccaccttcactctcataataatgctgcccag 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atcaaggggagtgggaagtagcagcacatccaccttcactctcataataatgctgcccag 486
Query: 480 acacag 485
||||||
Sbjct: 487 acacag 492
InterPro Scan of sequence was not informative:
